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Do the nonlinear regression results make sense?
First check whether the nonlinear regression program actually fit a curve. Sometimes the program cannot fit the data and reports an error instead, such as "floating point error" or "did not converge". This does not mean there is a bug in the program, just that it was not able to fit your data using the model and options you selected. The exact wording of the message is rarely helpful in diagnosing the problem. Consider the possibilities listed in Have you made a common error when using nonlinear regression?. Next, look at a graph of the best-fit curve. In rare cases, the curve may be far from the data points. This may happen, for example, if you picked the wrong equation. Look at the graph to make sure this didn't happen. If the curve goes near the points, look at the best-fit values of the parameters to see if they make sense. Nonlinear regression programs have no common sense and don't know the context of your experiment. The curve fitting procedure can sometimes yield results that make no scientific sense. For example with noisy or incomplete data, nonlinear regression can report a best-fit rate constant that is negative, a best-fit fraction that is greater than 1.0, or a best-fit Kd value that is negative. All these results are scientifically meaningless. Also check whether the best-fit values of the variables make sense in light of the range of the data. The results make no sense if the top plateau of a sigmoid curve is far larger than the highest data point, or an EC50 is not within the range of your X values. If the results make no scientific sense, they are unacceptable, even if the curve comes close to the points and R2 is close to 1.0. |
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